5NO3 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5NO3_008 | 1/A/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_5NO3_017 | 1/A/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5NO3_001 | No text annotation | ||
| HL_5NO3_033 | No text annotation | ||
| HL_5NO3_002 | No text annotation | ||
| HL_5NO3_003 | GNRA | ||
| HL_5NO3_004 | GNRA | ||
| HL_5NO3_034 | No text annotation | ||
| HL_5NO3_005 | UNCG | ||
| HL_5NO3_006 | GNRA related | ||
| HL_5NO3_007 | GNRA | ||
| HL_5NO3_009 | UNCG | ||
| HL_5NO3_010 | GNRA | ||
| HL_5NO3_011 | UNCG | ||
| HL_5NO3_012 | GNRA wlth extra near cWW | ||
| HL_5NO3_013 | No text annotation | ||
| HL_5NO3_035 | GNRA variation | ||
| HL_5NO3_014 | GNRA-like with tWH | ||
| HL_5NO3_015 | No text annotation | ||
| HL_5NO3_016 | GNRA | ||
| HL_5NO3_018 | No text annotation | ||
| HL_5NO3_036 | No text annotation | ||
| HL_5NO3_019 | GNRA | ||
| HL_5NO3_020 | GNRA | ||
| HL_5NO3_021 | No text annotation | ||
| HL_5NO3_022 | No text annotation | ||
| HL_5NO3_037 | GNRA | ||
| HL_5NO3_023 | No text annotation | ||
| HL_5NO3_024 | GNRA | ||
| HL_5NO3_025 | T-loop related | ||
| HL_5NO3_026 | No text annotation | ||
| HL_5NO3_027 | GNRA | ||
| HL_5NO3_028 | GNRA | ||
| HL_5NO3_029 | T-loop with 3 stacked bulged bases | ||
| HL_5NO3_030 | No text annotation | ||
| HL_5NO3_031 | UNCG | ||
| HL_5NO3_032 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5NO3_014 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_5NO3_038 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5NO3_066 | Isolated non-canonical cWW pair | ||
| IL_5NO3_001 | Single bulged G | ||
| IL_5NO3_002 | Single bulged A | ||
| IL_5NO3_003 | No text annotation | ||
| IL_5NO3_067 | No text annotation | ||
| IL_5NO3_004 | Minor groove platform | ||
| IL_5NO3_005 | Multiple bulged bases | ||
| IL_5NO3_006 | Minor groove platform with extra cWW | ||
| IL_5NO3_007 | Minor groove platform | ||
| IL_5NO3_068 | Single bulged G | ||
| IL_5NO3_008 | Single bulged G, near cWW | ||
| IL_5NO3_009 | Isolated non-canonical cWW pair | ||
| IL_5NO3_010 | Minor groove platform related | ||
| IL_5NO3_011 | Isolated cWH basepair | ||
| IL_5NO3_012 | tWH-tWH-tHW-tHW | ||
| IL_5NO3_069 | No text annotation | ||
| IL_5NO3_013 | Minor groove platform | ||
| IL_5NO3_015 | No text annotation | ||
| IL_5NO3_016 | C-loop | ||
| IL_5NO3_017 | Single bulged U | ||
| IL_5NO3_018 | C-loop | ||
| IL_5NO3_019 | Single bulged G | ||
| IL_5NO3_020 | No text annotation | ||
| IL_5NO3_021 | No text annotation | ||
| IL_5NO3_022 | tSH-tHW-tWW | ||
| IL_5NO3_023 | No text annotation | ||
| IL_5NO3_024 | SSU/LSU pseudoknot | ||
| IL_5NO3_025 | Kink-turn related | ||
| IL_5NO3_026 | No text annotation | ||
| IL_5NO3_027 | tSH-tHW-tHS | ||
| IL_5NO3_028 | Major groove platform | ||
| IL_5NO3_029 | Major groove minor groove platform; mini C-loop | ||
| IL_5NO3_070 | No text annotation | ||
| IL_5NO3_030 | No text annotation | ||
| IL_5NO3_031 | Major groove platform; stack outside cWW | ||
| IL_5NO3_071 | Single stack bend | ||
| IL_5NO3_032 | No text annotation | ||
| IL_5NO3_033 | Tandem non-canonical cWW pairs | ||
| IL_5NO3_072 | Triple non-canonical cWW pairs | ||
| IL_5NO3_034 | No text annotation | ||
| IL_5NO3_035 | Kink-turn | ||
| IL_5NO3_036 | Left turn | ||
| IL_5NO3_037 | tSH-tHW-tHS | ||
| IL_5NO3_039 | Single bulged A | ||
| IL_5NO3_040 | Single bulged G | ||
| IL_5NO3_041 | Minor groove platform | ||
| IL_5NO3_042 | Minor groove platform | ||
| IL_5NO3_073 | No text annotation | ||
| IL_5NO3_043 | Minor groove platform | ||
| IL_5NO3_044 | Single stack bend | ||
| IL_5NO3_074 | No text annotation | ||
| IL_5NO3_045 | No text annotation | ||
| IL_5NO3_046 | No text annotation | ||
| IL_5NO3_047 | No text annotation | ||
| IL_5NO3_075 | No text annotation | ||
| IL_5NO3_048 | Minor groove platform with extra cWW | ||
| IL_5NO3_078 | Minor groove platform | ||
| IL_5NO3_049 | Single bulged A | ||
| IL_5NO3_050 | Isolated non-canonical cWW pair | ||
| IL_5NO3_051 | No text annotation | ||
| IL_5NO3_052 | Minor groove platform | ||
| IL_5NO3_053 | No text annotation | ||
| IL_5NO3_054 | No text annotation | ||
| IL_5NO3_055 | 180 degree turn | ||
| IL_5NO3_056 | Double sheared with non-canonical cWW | ||
| IL_5NO3_057 | No text annotation | ||
| IL_5NO3_058 | No text annotation | ||
| IL_5NO3_059 | No text annotation | ||
| IL_5NO3_076 | Isolated non-canonical cWW pair | ||
| IL_5NO3_060 | No text annotation | ||
| IL_5NO3_077 | No text annotation | ||
| IL_5NO3_061 | Isolated non-canonical cWW pair | ||
| IL_5NO3_062 | Double sheared | ||
| IL_5NO3_063 | Triple sheared related | ||
| IL_5NO3_064 | Single bulged A | ||
| IL_5NO3_065 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_5NO3_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_5NO3_004 | 1/A/142:144, 1/A/178:184, 1/A/193:198, 1/A/219:221 | No text annotation | homologous J4_5J7L_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5NO3_001 | No text annotation | ||
| J3_5NO3_013 | No text annotation | ||
| J3_5NO3_002 | No text annotation | ||
| J3_5NO3_014 | No text annotation | ||
| J3_5NO3_003 | No text annotation | ||
| J3_5NO3_004 | No text annotation | ||
| J3_5NO3_015 | No text annotation | ||
| J3_5NO3_005 | No text annotation | ||
| J3_5NO3_006 | No text annotation | ||
| J3_5NO3_007 | No text annotation | ||
| J3_5NO3_016 | No text annotation | ||
| J3_5NO3_008 | No text annotation | ||
| J3_5NO3_009 | No text annotation | ||
| J3_5NO3_010 | No text annotation | ||
| J3_5NO3_011 | No text annotation | ||
| J3_5NO3_017 | No text annotation | ||
| J3_5NO3_012 | No text annotation | ||
| J4_5NO3_002 | No text annotation | ||
| J4_5NO3_005 | No text annotation | ||
| J4_5NO3_003 | No text annotation | ||
| J5_5NO3_001 | No text annotation | ||
| J5_5NO3_002 | No text annotation | ||
| J5_5NO3_003 | No text annotation |
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