Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5NO3_0081/A/320:333No text annotation
homologous
HL_5J7L_008
NA
HL_5NO3_0171/A/786:796No text annotation
homologous
HL_4LFB_017
HL_38491.2

Problematic loops

#loop idProblemSequence
HL_5NO3_001No text annotation
HL_5NO3_033No text annotation
HL_5NO3_002No text annotation
HL_5NO3_003GNRA
HL_5NO3_004GNRA
HL_5NO3_034No text annotation
HL_5NO3_005UNCG
HL_5NO3_006GNRA related
HL_5NO3_007GNRA
HL_5NO3_009UNCG
HL_5NO3_010GNRA
HL_5NO3_011UNCG
HL_5NO3_012GNRA wlth extra near cWW
HL_5NO3_013No text annotation
HL_5NO3_035GNRA variation
HL_5NO3_014GNRA-like with tWH
HL_5NO3_015No text annotation
HL_5NO3_016GNRA
HL_5NO3_018No text annotation
HL_5NO3_036No text annotation
HL_5NO3_019GNRA
HL_5NO3_020GNRA
HL_5NO3_021No text annotation
HL_5NO3_022No text annotation
HL_5NO3_037GNRA
HL_5NO3_023No text annotation
HL_5NO3_024GNRA
HL_5NO3_025T-loop related
HL_5NO3_026No text annotation
HL_5NO3_027GNRA
HL_5NO3_028GNRA
HL_5NO3_029T-loop with 3 stacked bulged bases
HL_5NO3_030No text annotation
HL_5NO3_031UNCG
HL_5NO3_032GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5NO3_0141/A/242:247,
1/A/277:284
Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.4
IL_5NO3_0381/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA

Problematic loops

#loop idProblemSequence
IL_5NO3_066Isolated non-canonical cWW pair
IL_5NO3_001Single bulged G
IL_5NO3_002Single bulged A
IL_5NO3_003No text annotation
IL_5NO3_067No text annotation
IL_5NO3_004Minor groove platform
IL_5NO3_005Multiple bulged bases
IL_5NO3_006Minor groove platform with extra cWW
IL_5NO3_007Minor groove platform
IL_5NO3_068Single bulged G
IL_5NO3_008Single bulged G, near cWW
IL_5NO3_009Isolated non-canonical cWW pair
IL_5NO3_010Minor groove platform related
IL_5NO3_011Isolated cWH basepair
IL_5NO3_012tWH-tWH-tHW-tHW
IL_5NO3_069No text annotation
IL_5NO3_013Minor groove platform
IL_5NO3_015No text annotation
IL_5NO3_016C-loop
IL_5NO3_017Single bulged U
IL_5NO3_018C-loop
IL_5NO3_019Single bulged G
IL_5NO3_020No text annotation
IL_5NO3_021No text annotation
IL_5NO3_022tSH-tHW-tWW
IL_5NO3_023No text annotation
IL_5NO3_024SSU/LSU pseudoknot
IL_5NO3_025Kink-turn related
IL_5NO3_026No text annotation
IL_5NO3_027tSH-tHW-tHS
IL_5NO3_028Major groove platform
IL_5NO3_029Major groove minor groove platform; mini C-loop
IL_5NO3_070No text annotation
IL_5NO3_030No text annotation
IL_5NO3_031Major groove platform; stack outside cWW
IL_5NO3_071Single stack bend
IL_5NO3_032No text annotation
IL_5NO3_033Tandem non-canonical cWW pairs
IL_5NO3_072Triple non-canonical cWW pairs
IL_5NO3_034No text annotation
IL_5NO3_035Kink-turn
IL_5NO3_036Left turn
IL_5NO3_037tSH-tHW-tHS
IL_5NO3_039Single bulged A
IL_5NO3_040Single bulged G
IL_5NO3_041Minor groove platform
IL_5NO3_042Minor groove platform
IL_5NO3_073No text annotation
IL_5NO3_043Minor groove platform
IL_5NO3_044Single stack bend
IL_5NO3_074No text annotation
IL_5NO3_045No text annotation
IL_5NO3_046No text annotation
IL_5NO3_047No text annotation
IL_5NO3_075No text annotation
IL_5NO3_048Minor groove platform with extra cWW
IL_5NO3_078Minor groove platform
IL_5NO3_049Single bulged A
IL_5NO3_050Isolated non-canonical cWW pair
IL_5NO3_051No text annotation
IL_5NO3_052Minor groove platform
IL_5NO3_053No text annotation
IL_5NO3_054No text annotation
IL_5NO3_055180 degree turn
IL_5NO3_056Double sheared with non-canonical cWW
IL_5NO3_057No text annotation
IL_5NO3_058No text annotation
IL_5NO3_059No text annotation
IL_5NO3_076Isolated non-canonical cWW pair
IL_5NO3_060No text annotation
IL_5NO3_077No text annotation
IL_5NO3_061Isolated non-canonical cWW pair
IL_5NO3_062Double sheared
IL_5NO3_063Triple sheared related
IL_5NO3_064Single bulged A
IL_5NO3_065No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J4_5NO3_0011/A/115:122,
1/A/239:240,
1/A/286:289,
1/A/311:312
No text annotation
homologous
J4_5J7L_001
NA
J4_5NO3_0041/A/142:144,
1/A/178:184,
1/A/193:198,
1/A/219:221
No text annotation
homologous
J4_5J7L_002
NA

Problematic loops

#loop idProblemSequence
J3_5NO3_001No text annotation
J3_5NO3_013No text annotation
J3_5NO3_002No text annotation
J3_5NO3_014No text annotation
J3_5NO3_003No text annotation
J3_5NO3_004No text annotation
J3_5NO3_015No text annotation
J3_5NO3_005No text annotation
J3_5NO3_006No text annotation
J3_5NO3_007No text annotation
J3_5NO3_016No text annotation
J3_5NO3_008No text annotation
J3_5NO3_009No text annotation
J3_5NO3_010No text annotation
J3_5NO3_011No text annotation
J3_5NO3_017No text annotation
J3_5NO3_012No text annotation
J4_5NO3_002No text annotation
J4_5NO3_005No text annotation
J4_5NO3_003No text annotation
J5_5NO3_001No text annotation
J5_5NO3_002No text annotation
J5_5NO3_003No text annotation

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