HL_5NO3_018

3D structure

PDB id

5NO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

5NO3|1|A|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NO3_018 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3925

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5NO3|1|A|C|839
5NO3|1|A|C|840
5NO3|1|A|C|841
5NO3|1|A|U|842
5NO3|1|A|U|843
5NO3|1|A|G|844
5NO3|1|A|A|845
5NO3|1|A|G|846
5NO3|1|A|G|847

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain R

30S ribosomal protein S18