HL_5NP6_001

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_001 not in the Motif Atlas

Geometric match to HL_4FRG_002

Geometric discrepancy: 0.1394

The information below is about HL_4FRG_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5NP6|1|A|C|11
5NP6|1|A|U|12
5NP6|1|A|U|13
5NP6|1|A|C|14
5NP6|1|A|G|15
5NP6|1|A|G|16

Current chains

Chain A

mRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain Y

Large subunit ribosomal RNA; LSU rRNA