5NP6 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5NP6_001 | 1/A/11:16 | GNRA | geometric HL_4FRG_002 HL_37824.8 | |
| HL_5NP6_002 | 1/B/13:22 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_5NP6_003 | 1/B/31:39 | tRNA anticodon loop | geometric HL_4TUE_034 HL_06059.7 | |
| HL_5NP6_004 | 1/B/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5HR6_003 HL_28252.9 | |
| HL_5NP6_005 | 1/D/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_5NP6_006 | 1/D/79:90 | No text annotation | ||
| HL_5NP6_007 | 1/D/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_5NP6_008 | 1/D/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_5NP6_009 | 1/D/207:212 | UNCG | homologous HL_5J7L_005 HL_34617.5 | |
| HL_5NP6_010 | 1/D/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_5NP6_011 | 1/D/296:301 | GNRA | homologous HL_6CZR_078 NA | |
| HL_5NP6_012 | 1/D/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_5NP6_013 | 1/D/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_5NP6_014 | 1/D/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.8 | |
| HL_5NP6_015 | 1/D/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_5NP6_016 | 1/D/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 HL_81538.2 | |
| HL_5NP6_106 | 1/D/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.8 | |
| HL_5NP6_018 | 1/D/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_10453.3 | |
| HL_5NP6_019 | 1/D/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_5NP6_020 | 1/D/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_5NP6_021 | 1/D/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_5NP6_022 | 1/D/840:846 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_5NP6_023 | 1/D/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_5NP6_024 | 1/D/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_5NP6_025 | 1/D/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_5NP6_026 | 1/D/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_5NP6_027 | 1/D/1028:1033 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_5NP6_028 | 1/D/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_5NP6_029 | 1/D/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_5NP6_030 | 1/D/1133:1141 | No text annotation | ||
| HL_5NP6_031 | 1/D/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_5NP6_032 | 1/D/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
| HL_5NP6_033 | 1/D/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_5NP6_034 | 1/D/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_5NP6_035 | 1/D/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_5NP6_036 | 1/D/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_5NP6_037 | 1/Y/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_5NP6_038 | 1/Y/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_5NP6_039 | 1/Y/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_5NP6_040 | 1/Y/137:142 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_5NP6_041 | 1/Y/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_5NP6_042 | 1/Y/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_5NP6_043 | 1/Y/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_5NP6_044 | 1/Y/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_5NP6_045 | 1/Y/305:312 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_01609.3 | |
| HL_5NP6_046 | 1/Y/327:335 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.2 | |
| HL_5NP6_047 | 1/Y/381:393 | No text annotation | homologous HL_4WF9_013 HL_69139.1 | |
| HL_5NP6_048 | 1/Y/410:417 | Pseudoknot geometry | homologous HL_4WF9_014 HL_30680.3 | |
| HL_5NP6_049 | 1/Y/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_5NP6_050 | 1/Y/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_5NP6_051 | 1/Y/545:548 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_5NP6_052 | 1/Y/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.9 | |
| HL_5NP6_053 | 1/Y/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_5NP6_054 | 1/Y/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_5NP6_055 | 1/Y/640:648 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_5NP6_056 | 1/Y/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_5NP6_057 | 1/Y/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.2 | |
| HL_5NP6_058 | 1/Y/779:785 | UNCG variation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_5NP6_059 | 1/Y/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_5NP6_060 | 1/Y/885:891 | No text annotation | ||
| HL_5NP6_110 | 1/Y/955:962 | GNRA | homologous HL_5J7L_211 HL_37824.8 | |
| HL_5NP6_062 | 1/Y/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_5NP6_063 | 1/Y/1092:1099 | No text annotation | homologous HL_8VTW_029 NA | |
| HL_5NP6_064 | 1/Y/1167:1182 | No text annotation | ||
| HL_5NP6_065 | 1/Y/1222:1227 | GNRA | homologous HL_7A0S_031 HL_37824.8 | |
| HL_5NP6_066 | 1/Y/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.9 | |
| HL_5NP6_067 | 1/Y/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_5NP6_068 | 1/Y/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_5NP6_069 | 1/Y/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_5NP6_108 | 1/Y/1450:1461 | UNCG variation | geometric HL_5J7L_200 HL_08100.1 | |
| HL_5NP6_070 | 1/Y/1451:1459 | No text annotation | geometric HL_5TBW_004 NA | |
| HL_5NP6_071 | 1/Y/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_5NP6_072 | 1/Y/1531:1540 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_5NP6_073 | 1/Y/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_5NP6_074 | 1/Y/1612:1619 | No text annotation | homologous HL_9DFE_038 HL_89567.2 | |
| HL_5NP6_075 | 1/Y/1629:1637 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
| HL_5NP6_076 | 1/Y/1691:1696 | UNCG | geometric HL_5J7L_011 HL_34617.5 | |
| HL_5NP6_077 | 1/Y/1727:1733 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_5NP6_078 | 1/Y/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5NP6_079 | 1/Y/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_5NP6_080 | 1/Y/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_5NP6_081 | 1/Y/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.8 | |
| HL_5NP6_082 | 1/Y/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_5NP6_083 | 1/Y/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_5NP6_084 | 1/Y/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.3 | |
| HL_5NP6_109 | 1/Y/2128:2161 | No text annotation | ||
| HL_5NP6_085 | 1/Y/2136:2155 | No text annotation | ||
| HL_5NP6_086 | 1/Y/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_5NP6_087 | 1/Y/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_5NP6_088 | 1/Y/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
| HL_5NP6_111 | 1/Y/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_5NP6_090 | 1/Y/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_5NP6_091 | 1/Y/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.8 | |
| HL_5NP6_092 | 1/Y/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.8 | |
| HL_5NP6_093 | 1/Y/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_5NP6_094 | 1/Y/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_5NP6_095 | 1/Y/2528:2535 | GNRA variation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_5NP6_096 | 1/Y/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_5NP6_097 | 1/Y/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.8 | |
| HL_5NP6_098 | 1/Y/2658:2663 | GNRA | homologous HL_4WF9_060 HL_37824.8 | |
| HL_5NP6_099 | 1/Y/2701:2706 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_65794.5 | |
| HL_5NP6_100 | 1/Y/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_5NP6_101 | 1/Y/2795:2801 | UNCG variation | homologous HL_5J7L_200 HL_08100.1 | |
| HL_5NP6_102 | 1/Y/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_5NP6_103 | 1/Y/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.8 | |
| HL_5NP6_104 | 1/Z/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_5NP6_105 | 1/Z/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5NP6_017 | No text annotation | ||
| HL_5NP6_107 | No text annotation | ||
| HL_5NP6_061 | No text annotation | ||
| HL_5NP6_089 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5NP6_001 | 1/B/29:31, 1/B/39:41 | Self complementary | homologous IL_5E81_371 NA | |
| IL_5NP6_002 | 1/D/30:32, 1/D/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.14 | |
| IL_5NP6_003 | 1/D/44:45, 1/D/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_5NP6_004 | 1/D/47:52, 1/D/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_5NP6_005 | 1/D/54:56, 1/D/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_5NP6_006 | 1/D/63:66, 1/D/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_5NP6_007 | 1/D/67:69, 1/D/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_5NP6_008 | 1/D/70:73, 1/D/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_5NP6_179 | 1/D/75:77, 1/D/92:95 | Single bulged G, near cWW | homologous IL_5J7L_008 NA | |
| IL_5NP6_010 | 1/D/128:131, 1/D/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_5NP6_011 | 1/D/132:136, 1/D/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_5NP6_012 | 1/D/144:146, 1/D/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_5NP6_013 | 1/D/147:153, 1/D/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_5NP6_014 | 1/D/203:206, 1/D/213:214 | No text annotation | ||
| IL_5NP6_015 | 1/D/242:247, 1/D/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_5NP6_016 | 1/D/249:252, 1/D/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_5NP6_017 | 1/D/292:293, 1/D/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_5NP6_018 | 1/D/367:369, 1/D/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_5NP6_019 | 1/D/371:375, 1/D/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_5NP6_020 | 1/D/375:376, 1/D/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.14 | |
| IL_5NP6_021 | 1/D/409:416, 1/D/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_5NP6_022 | 1/D/440:442, 1/D/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_5NP6_023 | 1/D/446:450, 1/D/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_5NP6_024 | 1/D/450:455, 1/D/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
| IL_5NP6_025 | 1/D/504:511, 1/D/540:541 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_5NP6_026 | 1/D/515:521, 1/D/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_5NP6_027 | 1/D/569:575, 1/D/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_5NP6_028 | 1/D/580:584, 1/D/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_5NP6_029 | 1/D/594:596, 1/D/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_5NP6_030 | 1/D/597:599, 1/D/639:643 | 8-nt loop receptor | geometric IL_6CK5_002 IL_36516.3 | |
| IL_5NP6_031 | 1/D/605:612, 1/D/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_5NP6_032 | 1/D/654:655, 1/D/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_5NP6_202 | 1/D/659:660, 1/D/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_5NP6_034 | 1/D/662:666, 1/D/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_5NP6_180 | 1/D/673:677, 1/D/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_5NP6_181 | 1/D/684:688, 1/D/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_5NP6_037 | 1/D/774:778, 1/D/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_5NP6_038 | 1/D/779:783, 1/D/799:803 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_5NP6_039 | 1/D/887:894, 1/D/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_5NP6_040 | 1/D/922:923, 1/D/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_5NP6_041 | 1/D/925:927, 1/D/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
| IL_5NP6_042 | 1/D/933:935, 1/D/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_5NP6_043 | 1/D/953:954, 1/D/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_5NP6_044 | 1/D/993:997, 1/D/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_5NP6_045 | 1/D/998:999, 1/D/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_5NP6_046 | 1/D/1048:1050, 1/D/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_5NP6_048 | 1/D/1052:1056, 1/D/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_5NP6_049 | 1/D/1057:1058, 1/D/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_5NP6_050 | 1/D/1060:1061, 1/D/1195:1197 | No text annotation | ||
| IL_5NP6_051 | 1/D/1061:1063, 1/D/1193:1195 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 IL_28037.2 | |
| IL_5NP6_052 | 1/D/1124:1128, 1/D/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_5NP6_053 | 1/D/1129:1132, 1/D/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_5NP6_054 | 1/D/1158:1161, 1/D/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_5NP6_055 | 1/D/1247:1253, 1/D/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_5NP6_056 | 1/D/1255:1258, 1/D/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_5NP6_057 | 1/D/1259:1263, 1/D/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 IL_17948.2 | |
| IL_5NP6_058 | 1/D/1303:1308, 1/D/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_5NP6_059 | 1/D/1399:1401, 1/D/1501:1504 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_5NP6_183 | 1/D/1399:1404, 1/D/1497:1504 | No text annotation | ||
| IL_5NP6_060 | 1/D/1401:1404, 1/D/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5NP6_061 | 1/D/1405:1409, 1/D/1491:1496 | No text annotation | homologous IL_5J7L_060 NA | |
| IL_5NP6_062 | 1/D/1412:1414, 1/D/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_5NP6_063 | 1/D/1416:1419, 1/D/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_5NP6_064 | 1/D/1430:1435, 1/D/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_5NP6_065 | 1/D/1440:1442, 1/D/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
| IL_5NP6_066 | 1/D/1445:1448, 1/D/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_5NP6_067 | 1/Y/24:30, 1/Y/510:516 | Triple sheared with non-canonical cWW | geometric IL_7A0S_001 IL_04021.2 | |
| IL_5NP6_068 | 1/Y/36:37, 1/Y/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.7 | |
| IL_5NP6_069 | 1/Y/43:44, 1/Y/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_5NP6_070 | 1/Y/81:85, 1/Y/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_5NP6_071 | 1/Y/183:184, 1/Y/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_5NP6_072 | 1/Y/188:194, 1/Y/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_04346.10 | |
| IL_5NP6_073 | 1/Y/239:245, 1/Y/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_5NP6_074 | 1/Y/269:271, 1/Y/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_5NP6_075 | 1/Y/274:281, 1/Y/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_5NP6_184 | 1/Y/274:282, 1/Y/358:363 | No text annotation | ||
| IL_5NP6_076 | 1/Y/293:295, 1/Y/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_5NP6_077 | 1/Y/481:484, 1/Y/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_5NP6_078 | 1/Y/536:539, 1/Y/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_5NP6_079 | 1/Y/564:566, 1/Y/575:577 | Isolated non-canonical cWW pair | geometric IL_7A0S_011 IL_07785.1 | |
| IL_5NP6_080 | 1/Y/606:610, 1/Y/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_5NP6_081 | 1/Y/672:674, 1/Y/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_5NP6_082 | 1/Y/674:678, 1/Y/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_5NP6_083 | 1/Y/697:698, 1/Y/763:765 | Single bulged A | geometric IL_4V9F_025 IL_31462.7 | |
| IL_5NP6_084 | 1/Y/702:703, 1/Y/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_5NP6_085 | 1/Y/703:707, 1/Y/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_5NP6_086 | 1/Y/738:740, 1/Y/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_5NP6_087 | 1/Y/775:777, 1/Y/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_5NP6_088 | 1/Y/837:838, 1/Y/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_5NP6_089 | 1/Y/844:847, 1/Y/933:934 | 90 degree turn | homologous IL_5J7L_267 IL_90729.1 | |
| IL_5NP6_185 | 1/Y/844:848, 1/Y/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_5NP6_090 | 1/Y/847:848, 1/Y/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_5NP6_091 | 1/Y/850:851, 1/Y/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_5NP6_092 | 1/Y/856:862, 1/Y/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_5NP6_093 | 1/Y/862:863, 1/Y/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.14 | |
| IL_5NP6_094 | 1/Y/864:868, 1/Y/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 IL_26222.2 | |
| IL_5NP6_095 | 1/Y/870:872, 1/Y/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_5NP6_186 | 1/Y/873:879, 1/Y/898:904 | No text annotation | ||
| IL_5NP6_096 | 1/Y/875:879, 1/Y/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 IL_17948.2 | |
| IL_5NP6_097 | 1/Y/880:882, 1/Y/894:897 | Isolated non-canonical cWW pair | geometric IL_4V88_398 NA | |
| IL_5NP6_098 | 1/Y/994:996, 1/Y/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_5NP6_099 | 1/Y/998:1002, 1/Y/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_5NP6_100 | 1/Y/1004:1011, 1/Y/1150:1151 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_5NP6_101 | 1/Y/1011:1013, 1/Y/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_5NP6_102 | 1/Y/1018:1024, 1/Y/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_5NP6_103 | 1/Y/1024:1030, 1/Y/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_5NP6_104 | 1/Y/1031:1034, 1/Y/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_5NP6_105 | 1/Y/1038:1041, 1/Y/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_5NP6_106 | 1/Y/1043:1052, 1/Y/1107:1112 | No text annotation | ||
| IL_5NP6_187 | 1/Y/1043:1090, 1/Y/1101:1112 | No text annotation | ||
| IL_5NP6_107 | 1/Y/1055:1090, 1/Y/1101:1104 | No text annotation | ||
| IL_5NP6_108 | 1/Y/1196:1198, 1/Y/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
| IL_5NP6_109 | 1/Y/1202:1206, 1/Y/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_5NP6_110 | 1/Y/1208:1215, 1/Y/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_5NP6_111 | 1/Y/1262:1269, 1/Y/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_5NP6_112 | 1/Y/1310:1313, 1/Y/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_50694.7 | |
| IL_5NP6_113 | 1/Y/1319:1323, 1/Y/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_5NP6_114 | 1/Y/1351:1355, 1/Y/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.2 | |
| IL_5NP6_115 | 1/Y/1357:1361, 1/Y/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_5NP6_189 | 1/Y/1415:1416, 1/Y/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_5NP6_117 | 1/Y/1417:1421, 1/Y/1577:1581 | UAA/GAN | geometric IL_5J7L_295 IL_38507.2 | |
| IL_5NP6_118 | 1/Y/1432:1435, 1/Y/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_5NP6_119 | 1/Y/1437:1440, 1/Y/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_99646.2 | |
| IL_5NP6_120 | 1/Y/1450:1451, 1/Y/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_5NP6_121 | 1/Y/1468:1471, 1/Y/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_5NP6_190 | 1/Y/1474:1478, 1/Y/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_5NP6_123 | 1/Y/1481:1482, 1/Y/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_5NP6_124 | 1/Y/1489:1491, 1/Y/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_5NP6_125 | 1/Y/1526:1529, 1/Y/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_5NP6_126 | 1/Y/1651:1656, 1/Y/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.4 | |
| IL_5NP6_127 | 1/Y/1663:1665, 1/Y/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_5NP6_128 | 1/Y/1666:1669, 1/Y/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_50694.7 | |
| IL_5NP6_191 | 1/Y/1666:1674, 1/Y/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_5NP6_129 | 1/Y/1669:1674, 1/Y/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.2 | |
| IL_5NP6_130 | 1/Y/1686:1691, 1/Y/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_5NP6_131 | 1/Y/1712:1718, 1/Y/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_5NP6_132 | 1/Y/1720:1726, 1/Y/1734:1740 | No text annotation | ||
| IL_5NP6_133 | 1/Y/1770:1771, 1/Y/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.7 | |
| IL_5NP6_134 | 1/Y/1798:1804, 1/Y/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.5 | |
| IL_5NP6_135 | 1/Y/1837:1840, 1/Y/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_5NP6_136 | 1/Y/1841:1842, 1/Y/1898:1901 | Major groove intercalation | homologous IL_7A0S_067 IL_66635.5 | |
| IL_5NP6_137 | 1/Y/1846:1849, 1/Y/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_5NP6_193 | 1/Y/1851:1860, 1/Y/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_5NP6_138 | 1/Y/1864:1867, 1/Y/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 IL_77691.5 | |
| IL_5NP6_139 | 1/Y/1933:1934, 1/Y/1964:1967 | Bulged stacked bases | homologous IL_7A0S_071 IL_22551.4 | |
| IL_5NP6_140 | 1/Y/1934:1945, 1/Y/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_5NP6_141 | 1/Y/2050:2052, 1/Y/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_5NP6_142 | 1/Y/2054:2056, 1/Y/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_5NP6_194 | 1/Y/2067:2069, 1/Y/2442:2443 | Single bulged U | homologous IL_5J7L_388 IL_89505.4 | |
| IL_5NP6_145 | 1/Y/2070:2071, 1/Y/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_5NP6_146 | 1/Y/2081:2083, 1/Y/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_5NP6_147 | 1/Y/2085:2087, 1/Y/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_5NP6_148 | 1/Y/2103:2105, 1/Y/2184:2186 | Isolated non-canonical cWW pair | geometric IL_4E48_006 IL_87907.2 | |
| IL_5NP6_196 | 1/Y/2106:2120, 1/Y/2178:2183 | No text annotation | ||
| IL_5NP6_197 | 1/Y/2121:2128, 1/Y/2161:2177 | No text annotation | ||
| IL_5NP6_151 | 1/Y/2128:2136, 1/Y/2155:2161 | No text annotation | ||
| IL_5NP6_152 | 1/Y/2202:2204, 1/Y/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_5NP6_153 | 1/Y/2350:2353, 1/Y/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_5NP6_154 | 1/Y/2401:2403, 1/Y/2414:2415 | No text annotation | ||
| IL_5NP6_155 | 1/Y/2453:2455, 1/Y/2496:2500 | No text annotation | homologous IL_5J7L_335 NA | |
| IL_5NP6_198 | 1/Y/2457:2459, 1/Y/2493:2494 | Major groove platform | homologous IL_5J7L_393 IL_07039.3 | |
| IL_5NP6_157 | 1/Y/2459:2461, 1/Y/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7A0S_086 IL_51387.3 | |
| IL_5NP6_158 | 1/Y/2466:2470, 1/Y/2480:2484 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_17948.2 | |
| IL_5NP6_159 | 1/Y/2510:2512, 1/Y/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_5NP6_160 | 1/Y/2512:2513, 1/Y/2571:2574 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_5NP6_161 | 1/Y/2522:2523, 1/Y/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_5NP6_163 | 1/Y/2591:2592, 1/Y/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5NP6_164 | 1/Y/2636:2640, 1/Y/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_5NP6_165 | 1/Y/2652:2658, 1/Y/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_5NP6_166 | 1/Y/2680:2684, 1/Y/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_5NP6_167 | 1/Y/2687:2691, 1/Y/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_5NP6_168 | 1/Y/2695:2696, 1/Y/2711:2714 | Multiple bulged bases | homologous IL_4WF9_103 IL_42626.2 | |
| IL_5NP6_169 | 1/Y/2737:2742, 1/Y/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_5NP6_170 | 1/Y/2806:2811, 1/Y/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_5NP6_171 | 1/Y/2838:2839, 1/Y/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_5NP6_172 | 1/Y/2843:2846, 1/Y/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_5NP6_173 | 1/Y/2847:2852, 1/Y/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_5NP6_174 | 1/Z/17:19, 1/Z/64:67 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
| IL_5NP6_203 | 1/Z/23:28, 1/Z/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_5NP6_176 | 1/Z/30:31, 1/Z/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_5NP6_177 | 1/Z/34:38, 1/Z/44:48 | Symmetric double minor groove platform | geometric IL_4V9F_104 IL_58103.11 | |
| IL_5NP6_178 | 1/Z/71:79, 1/Z/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5NP6_009 | Tandem non-canonical cWW pairs | ||
| IL_5NP6_033 | No text annotation | ||
| IL_5NP6_035 | No text annotation | ||
| IL_5NP6_036 | Kink-turn | ||
| IL_5NP6_182 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_5NP6_047 | Stack and bulge | ||
| IL_5NP6_188 | No text annotation | ||
| IL_5NP6_116 | No text annotation | ||
| IL_5NP6_122 | No text annotation | ||
| IL_5NP6_192 | No text annotation | ||
| IL_5NP6_143 | No text annotation | ||
| IL_5NP6_144 | Isolated non-canonical cWW pair | ||
| IL_5NP6_195 | Triple non-canonical cWW pairs | ||
| IL_5NP6_149 | No text annotation | ||
| IL_5NP6_150 | No text annotation | ||
| IL_5NP6_156 | No text annotation | ||
| IL_5NP6_162 | Tandem non-canonical cWW pairs | ||
| IL_5NP6_199 | Isolated non-canonical cWW pair | ||
| IL_5NP6_200 | Isolated non-canonical cWW with bulges | ||
| IL_5NP6_201 | No text annotation | ||
| IL_5NP6_175 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5NP6_001 | 1/D/46:47, 1/D/361:367, 1/D/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_5NP6_026 | 1/D/46:52, 1/D/359:367, 1/D/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_5NP6_002 | 1/D/586:588, 1/D/651:654, 1/D/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_5NP6_027 | 1/D/586:588, 1/D/651:655, 1/D/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_5NP6_003 | 1/D/672:673, 1/D/717:725, 1/D/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_5NP6_004 | 1/D/826:829, 1/D/857:861, 1/D/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_5NP6_028 | 1/D/936:939, 1/D/1344:1350, 1/D/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_5NP6_005 | 1/D/943:946, 1/D/1235:1237, 1/D/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_5NP6_006 | 1/D/955:962, 1/D/973:985, 1/D/1220:1225 | No text annotation | homologous J3_6CZR_062 NA | |
| J3_5NP6_007 | 1/D/990:993, 1/D/1045:1047, 1/D/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_5NP6_029 | 1/D/990:997, 1/D/1044:1047, 1/D/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_5NP6_008 | 1/D/1003:1007, 1/D/1022:1028, 1/D/1033:1037 | No text annotation | ||
| J3_5NP6_009 | 1/D/1063:1068, 1/D/1107:1113, 1/D/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_5NP6_036 | 1/D/1073:1074, 1/D/1083:1086, 1/D/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_5NP6_011 | 1/D/1116:1118, 1/D/1155:1158, 1/D/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_5NP6_031 | 1/D/1116:1118, 1/D/1155:1161, 1/D/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_5NP6_012 | 1/D/1237:1241, 1/D/1296:1303, 1/D/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_5NP6_013 | 1/Y/30:31, 1/Y/474:481, 1/Y/509:510 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_5NP6_032 | 1/Y/32:35, 1/Y/445:461, 1/Y/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_5NP6_014 | 1/Y/56:57, 1/Y/70:76, 1/Y/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_5NP6_033 | 1/Y/297:301, 1/Y/316:325, 1/Y/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_5NP6_015 | 1/Y/683:689, 1/Y/773:775, 1/Y/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_5NP6_016 | 1/Y/698:700, 1/Y/732:736, 1/Y/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5NP6_017 | 1/Y/1298:1303, 1/Y/1625:1627, 1/Y/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_5NP6_018 | 1/Y/1306:1309, 1/Y/1605:1611, 1/Y/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_5NP6_019 | 1/Y/1344:1349, 1/Y/1382:1385, 1/Y/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_5NP6_034 | 1/Y/1424:1429, 1/Y/1564:1565, 1/Y/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_5NP6_020 | 1/Y/2091:2093, 1/Y/2196:2200, 1/Y/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 J3_89368.5 | |
| J3_5NP6_035 | 1/Y/2282:2284, 1/Y/2384:2395, 1/Y/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_5NP6_021 | 1/Y/2295:2299, 1/Y/2317:2323, 1/Y/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_5NP6_022 | 1/Y/2517:2520, 1/Y/2545:2547, 1/Y/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_5NP6_023 | 1/Y/2789:2791, 1/Y/2805:2806, 1/Y/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_5NP6_024 | 1/Y/2812:2815, 1/Y/2831:2836, 1/Y/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_5NP6_025 | 1/Z/10:16, 1/Z/68:70, 1/Z/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_5NP6_015 | 1/B/7:10, 1/B/25:27, 1/B/43:50, 1/B/64:66 | No text annotation | ||
| J4_5NP6_002 | 1/D/115:122, 1/D/239:240, 1/D/286:289, 1/D/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_5NP6_003 | 1/D/142:144, 1/D/178:184, 1/D/193:198, 1/D/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_5NP6_004 | 1/D/575:577, 1/D/764:769, 1/D/810:821, 1/D/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_5NP6_005 | 1/Y/268:269, 1/Y/370:375, 1/Y/399:406, 1/Y/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_5NP6_006 | 1/Y/601:604, 1/Y/624:628, 1/Y/635:638, 1/Y/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_5NP6_007 | 1/Y/1270:1276, 1/Y/1294:1295, 1/Y/1645:1648, 1/Y/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_5NP6_008 | 1/Y/1310:1314, 1/Y/1338:1343, 1/Y/1404:1405, 1/Y/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_5NP6_009 | 1/Y/1313:1314, 1/Y/1338:1343, 1/Y/1404:1405, 1/Y/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_5NP6_010 | 1/Y/1444:1445, 1/Y/1466:1467, 1/Y/1525:1526, 1/Y/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_5NP6_011 | 1/Y/1772:1776, 1/Y/1788:1792, 1/Y/1827:1830, 1/Y/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_5NP6_012 | 1/Y/1833:1835, 1/Y/1905:1906, 1/Y/1924:1933, 1/Y/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_5NP6_013 | 1/Y/2285:2289, 1/Y/2343:2347, 1/Y/2370:2372, 1/Y/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_5NP6_014 | 1/Y/2643:2646, 1/Y/2674:2676, 1/Y/2731:2735, 1/Y/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_5NP6_009 | 1/D/36:39, 1/D/403:408, 1/D/434:440, 1/D/497:500, 1/D/545:548 | No text annotation | ||
| J5_5NP6_002 | 1/D/58:61, 1/D/106:113, 1/D/314:316, 1/D/337:339, 1/D/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_5NP6_003 | 1/Y/47:54, 1/Y/116:121, 1/Y/130:131, 1/Y/148:150, 1/Y/176:178 | No text annotation | ||
| J5_5NP6_004 | 1/Y/531:533, 1/Y/560:564, 1/Y/577:579, 1/Y/1261:1262, 1/Y/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_5NP6_005 | 1/Y/584:589, 1/Y/668:671, 1/Y/809:812, 1/Y/1195:1196, 1/Y/1250:1256 | No text annotation | homologous J5_7A0S_004 J5_74302.5 | |
| J5_5NP6_006 | 1/Y/1674:1682, 1/Y/1706:1707, 1/Y/1751:1752, 1/Y/1756:1764, 1/Y/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_5NP6_007 | 1/Y/2057:2064, 1/Y/2446:2453, 1/Y/2500:2508, 1/Y/2580:2588, 1/Y/2606:2611 | No text annotation | ||
| J5_5NP6_008 | 1/Y/2074:2077, 1/Y/2243:2246, 1/Y/2258:2259, 1/Y/2281:2282, 1/Y/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_5NP6_003 | 1/Y/45:46, 1/Y/179:183, 1/Y/214:224, 1/Y/231:235, 1/Y/262:266, 1/Y/426:433 | No text annotation | ||
| J6_5NP6_002 | 1/Y/2074:2077, 1/Y/2243:2246, 1/Y/2258:2259, 1/Y/2281:2284, 1/Y/2384:2395, 1/Y/2421:2435 | No text annotation | ||
| J7_5NP6_001 | 1/Y/8:15, 1/Y/525:531, 1/Y/2018:2023, 1/Y/2040:2043, 1/Y/2625:2630, 1/Y/2788:2789, 1/Y/2894:2895 | No text annotation | ||
| J7_5NP6_002 | 1/Y/817:822, 1/Y/835:838, 1/Y/940:946, 1/Y/971:976, 1/Y/987:991, 1/Y/1163:1164, 1/Y/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5NP6_030 | No text annotation | ||
| J3_5NP6_010 | No text annotation | ||
| J4_5NP6_001 | No text annotation | ||
| J5_5NP6_001 | No text annotation | ||
| J6_5NP6_001 | No text annotation |
Coloring options: