HL_5NP6_002

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCCGGUAG

Length

10 nucleotides

Bulged bases

5NP6|1|B|C|17, 5NP6|1|B|G|18, 5NP6|1|B|G|19, 5NP6|1|B|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_002 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.183

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NP6|1|B|C|13
5NP6|1|B|A|14
5NP6|1|B|G|15
5NP6|1|B|C|16
5NP6|1|B|C|17
5NP6|1|B|G|18
5NP6|1|B|G|19
5NP6|1|B|U|20
5NP6|1|B|A|21
5NP6|1|B|G|22

Current chains

Chain B

P-site tRNA-Gly

Nearby chains

Chain Y

Large subunit ribosomal RNA; LSU rRNA

Chain d

50S ribosomal protein L5