HL_5NP6_003
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUGCCGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NP6_003 not in the Motif Atlas
- Geometric match to HL_4TUE_034
- Geometric discrepancy: 0.1967
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5NP6|1|B|C|31
5NP6|1|B|A|32
5NP6|1|B|U|33
5NP6|1|B|G|34
5NP6|1|B|C|35
5NP6|1|B|C|36
5NP6|1|B|G|37
5NP6|1|B|U|38
5NP6|1|B|G|39
Current chains
- Chain B
- P-site tRNA-Gly
Nearby chains
- Chain A
- mRNA
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S ribosomal protein S9
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