HL_5NP6_004
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NP6_004 not in the Motif Atlas
- Homologous match to HL_5HR6_003
- Geometric discrepancy: 0.1677
- The information below is about HL_5HR6_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5NP6|1|B|G|53
5NP6|1|B|U|54
5NP6|1|B|U|55
5NP6|1|B|C|56
5NP6|1|B|A|57
5NP6|1|B|A|58
5NP6|1|B|A|59
5NP6|1|B|U|60
5NP6|1|B|C|61
Current chains
- Chain B
- P-site tRNA-Gly
Nearby chains
- Chain Y
- Large subunit ribosomal RNA; LSU rRNA
- Chain d
- 50S ribosomal protein L5
- Chain k
- 50S ribosomal protein L16
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