HL_5NP6_011

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_011 not in the Motif Atlas

Homologous match to HL_6CZR_078

Geometric discrepancy: 0.2871

The information below is about HL_6CZR_078

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5NP6|1|D|U|296
5NP6|1|D|G|297
5NP6|1|D|A|298
5NP6|1|D|G|299
5NP6|1|D|A|300
5NP6|1|D|G|301

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S4

Chain H

30S ribosomal protein S5

Chain T

30S ribosomal protein S17