HL_5NP6_016

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5NP6|1|D|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_016 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.221

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5NP6|1|D|G|462
5NP6|1|D|U|463
5NP6|1|D|U|464
5NP6|1|D|A|465
5NP6|1|D|A|466
5NP6|1|D|U|467
5NP6|1|D|A|468
5NP6|1|D|C|469
5NP6|1|D|C|470

Current chains

Chain D

16S ribosomal RNA

Nearby chains