HL_5NP6_038
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NP6_038 not in the Motif Atlas
- Homologous match to HL_5J7L_135
- Geometric discrepancy: 0.2549
- The information below is about HL_5J7L_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80241.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NP6|1|Y|U|87
5NP6|1|Y|G|88
5NP6|1|Y|A|89
5NP6|1|Y|U|90
5NP6|1|Y|A|91
5NP6|1|Y|U|92
5NP6|1|Y|G|93
5NP6|1|Y|A|94
5NP6|1|Y|A|95
Current chains
- Chain Y
- 23S ribosomal RNA
Nearby chains
- Chain C
- DNA topoisomerase small subunit
- Chain r
- 50S ribosomal protein L23
- Chain s
- 50S ribosomal protein L24
- Chain w
- 50S ribosomal protein L29
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