HL_5NP6_062

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_062 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.2413

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5NP6|1|Y|G|978
5NP6|1|Y|A|979
5NP6|1|Y|A|980
5NP6|1|Y|A|981
5NP6|1|Y|C|982
5NP6|1|Y|A|983
5NP6|1|Y|A|984
5NP6|1|Y|C|985

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain o

50S ribosomal protein L20

Chain p

50S ribosomal protein L21

Chain x

50S ribosomal protein L30