HL_5NP6_063

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_063 not in the Motif Atlas

Homologous match to HL_8VTW_029

Geometric discrepancy: 0.4431

The information below is about HL_8VTW_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NP6|1|Y|C|1092
5NP6|1|Y|G|1093
5NP6|1|Y|U|1094
5NP6|1|Y|A|1095
5NP6|1|Y|A|1096
5NP6|1|Y|U|1097
5NP6|1|Y|A|1098
5NP6|1|Y|G|1099

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain 3

50S ribosomal protein L10

Chain e

50S ribosomal protein L6

Chain g

50S ribosomal protein L11