HL_5NP6_072

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CACUACGGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_072 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.303

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5NP6|1|Y|C|1531
5NP6|1|Y|A|1532
5NP6|1|Y|C|1533
5NP6|1|Y|U|1534
5NP6|1|Y|A|1535
5NP6|1|Y|C|1536
5NP6|1|Y|G|1537
5NP6|1|Y|G|1538
5NP6|1|Y|U|1539
5NP6|1|Y|G|1540

Current chains

Chain Y

23S ribosomal RNA

Nearby chains