HL_5NP6_076

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5NP6|1|Y|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_076 not in the Motif Atlas

Geometric match to HL_5J7L_011

Geometric discrepancy: 0.124

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5NP6|1|Y|C|1691
5NP6|1|Y|U|1692
5NP6|1|Y|U|1693
5NP6|1|Y|C|1694
5NP6|1|Y|G|1695
5NP6|1|Y|G|1696

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2