HL_5NP6_088

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5NP6|1|Y|A|2268, 5NP6|1|Y|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_088 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1624

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

5NP6|1|Y|C|2264
5NP6|1|Y|U|2265
5NP6|1|Y|A|2266
5NP6|1|Y|A|2267
5NP6|1|Y|A|2268
5NP6|1|Y|G|2269
5NP6|1|Y|A|2270
5NP6|1|Y|G|2271
5NP6|1|Y|U|2272
5NP6|1|Y|A|2273
5NP6|1|Y|A|2274
5NP6|1|Y|C|2275
5NP6|1|Y|G|2276

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L16

Chain u

50S ribosomal protein L27