HL_5NP6_099

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_099 not in the Motif Atlas

Homologous match to HL_7A0S_064

Geometric discrepancy: 0.1837

The information below is about HL_7A0S_064

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5NP6|1|Y|U|2701
5NP6|1|Y|G|2702
5NP6|1|Y|C|2703
5NP6|1|Y|C|2704
5NP6|1|Y|A|2705
5NP6|1|Y|A|2706

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L17