HL_5NRG_007

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

AAAAUU

Length

6 nucleotides

Bulged bases

5NRG|1|X|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_007 not in the Motif Atlas

Homologous match to HL_4WF9_007

Geometric discrepancy: 0.0863

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

5NRG|1|X|A|228
5NRG|1|X|A|229
5NRG|1|X|A|230
5NRG|1|X|A|231
5NRG|1|X|U|232
5NRG|1|X|U|233

Current chains

Chain X

23S ribosomal RNA

Nearby chains