RNA 3D Hub //

5NRG Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5NRG_0011/X/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_17803.1
HL_5NRG_0021/X/87:95Pseudoknot geometry
homologous
HL_4WF9_002
HL_00911.2
HL_5NRG_0031/X/122:127No text annotation
homologous
HL_4WF9_003
HL_75660.7
HL_5NRG_0681/X/131:148No text annotation
HL_5NRG_0041/X/135:144No text annotation
geometric
HL_8KAL_008
NA
HL_5NRG_0061/X/197:204No text annotation
homologous
HL_4WF9_006
HL_48677.1
HL_5NRG_0071/X/228:233No text annotation
homologous
HL_4WF9_007
HL_51020.2
HL_5NRG_0081/X/249:255No text annotation
homologous
HL_4WF9_008
HL_76371.2
HL_5NRG_0691/X/280:291No text annotation
homologous
HL_4WF9_068
HL_76195.1
HL_5NRG_0091/X/282:289No text annotation
HL_5NRG_0101/X/348:355T-loop with 2 stacked bulged bases
homologous
HL_4WF9_010
HL_13999.2
HL_5NRG_0111/X/362:366No text annotation
homologous
HL_4WF9_011
HL_75660.7
HL_5NRG_0121/X/370:378T-loop with unstacked turn
homologous
HL_4WF9_012
HL_27670.3
HL_5NRG_0131/X/427:439No text annotation
homologous
HL_4WF9_013
HL_69139.1
HL_5NRG_0141/X/456:463Pseudoknot geometry
homologous
HL_4WF9_014
HL_30680.5
HL_5NRG_0151/X/508:513GNRA
homologous
HL_4WF9_015
HL_34789.2
HL_5NRG_0161/X/533:538GNRA
homologous
HL_4WF9_016
HL_34789.2
HL_5NRG_0171/X/587:594No text annotation
homologous
HL_4WF9_017
HL_50318.1
HL_5NRG_0181/X/609:618T-loop with 2 stacked bulged bases
geometric
HL_4WF9_018
HL_33597.2
HL_5NRG_0721/X/655:661No text annotation
HL_5NRG_0201/X/674:679GNRA
homologous
HL_4WF9_020
HL_34789.2
HL_5NRG_0701/X/686:692GNRA
homologous
HL_4WF9_021
HL_34789.2
HL_5NRG_0231/X/789:798No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_5NRG_0711/X/824:830No text annotation
homologous
HL_4WF9_024
HL_92935.1
HL_5NRG_0251/X/871:876No text annotation
homologous
HL_4WF9_025
HL_27530.1
HL_5NRG_0271/X/999:1006GNRA
homologous
HL_4WF9_027
HL_34789.2
HL_5NRG_0281/X/1022:1029No text annotation
homologous
HL_4WF9_028
HL_47171.1
HL_5NRG_0311/X/1260:1265GNRA
homologous
HL_4WF9_031
HL_34789.2
HL_5NRG_0321/X/1318:1326T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_33597.2
HL_5NRG_0331/X/1361:1367Pseudoknot geometry with 3' bulge
homologous
HL_4WF9_033
HL_49081.1
HL_5NRG_0341/X/1400:1405GNRA
homologous
HL_4WF9_034
HL_34789.2
HL_5NRG_0351/X/1426:1435No text annotation
homologous
HL_4WF9_035
HL_77449.1
HL_5NRG_0371/X/1612:1615Mini UNCG
homologous
HL_4WF9_037
HL_90436.2
HL_5NRG_0381/X/1656:1663No text annotation
homologous
HL_4WF9_038
HL_28592.1
HL_5NRG_0391/X/1673:1681GNRA with extra cWW
homologous
HL_4WF9_039
HL_87268.1
HL_5NRG_0401/X/1735:1740No text annotation
geometric
HL_7RQB_042
NA
HL_5NRG_0411/X/1756:1773No text annotation
HL_5NRG_0421/X/1779:1783No text annotation
homologous
HL_4WF9_042
HL_80709.5
HL_5NRG_0431/X/1804:1814No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_5NRG_0441/X/1833:1838No text annotation
homologous
HL_4WF9_044
NA
HL_5NRG_0461/X/1976:1984No text annotation
homologous
HL_4WF9_046
HL_61418.2
HL_5NRG_0471/X/2054:2063No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_5NRG_0491/X/2236:2242No text annotation
homologous
HL_4WF9_048
HL_42293.1
HL_5NRG_0501/X/2275:2283No text annotation
homologous
HL_4WF9_049
HL_11974.2
HL_5NRG_0511/X/2291:2303No text annotation
homologous
HL_4WF9_050
HL_02042.1
HL_5NRG_0521/X/2330:2340No text annotation
homologous
HL_7A0S_054
NA
HL_5NRG_0531/X/2351:2358Pseudoknot geometry
homologous
HL_4WF9_052
HL_52651.2
HL_5NRG_0541/X/2382:2389GNRA with extra cWW
homologous
HL_4WF9_053
HL_87268.1
HL_5NRG_0551/X/2401:2406GNRA
homologous
HL_4WF9_054
HL_34789.2
HL_5NRG_0561/X/2431:2440No text annotation
homologous
HL_4WF9_055
HL_51853.2
HL_5NRG_0581/X/2555:2562No text annotation
homologous
HL_7RQB_061
NA
HL_5NRG_0591/X/2578:2584No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_5NRG_0601/X/2621:2626GNRA
homologous
HL_4WF9_059
HL_34789.2
HL_5NRG_0611/X/2685:2690GNRA
homologous
HL_7RQB_064
NA
HL_5NRG_0621/X/2728:2733Ribsomal LSU H95
homologous
HL_4WF9_061
HL_12125.2
HL_5NRG_0631/X/2772:2786No text annotation
homologous
HL_4WF9_062
HL_53269.2
HL_5NRG_0651/X/2839:2847No text annotation
homologous
HL_4WF9_064
HL_37889.1
HL_5NRG_0731/X/2875:2882GNRA with extra cWH
geometric
HL_7QR8_003
NA
HL_5NRG_0671/Y/32:46No text annotation
homologous
HL_4WF9_070
HL_97756.3

Problematic loops

#loop idProblemSequence
HL_5NRG_005No text annotation
HL_5NRG_019No text annotation
HL_5NRG_021Anticodon loop related
HL_5NRG_022No text annotation
HL_5NRG_024No text annotation
HL_5NRG_026No text annotation
HL_5NRG_029tRNA D-loop
HL_5NRG_030No text annotation
HL_5NRG_036No text annotation
HL_5NRG_045No text annotation
HL_5NRG_048No text annotation
HL_5NRG_057No text annotation
HL_5NRG_064No text annotation
HL_5NRG_066No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5NRG_0011/X/24:30,
1/X/555:561		Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_22311.1
IL_5NRG_0021/X/36:37,
1/X/488:490		Single bulged A
homologous
IL_4WF9_002
IL_14190.2
IL_5NRG_0031/X/42:44,
1/X/480:483		Minor groove platform with extra cWW
homologous
IL_4WF9_003
IL_82096.1
IL_5NRG_0041/X/81:85,
1/X/97:104		Kink-turn
homologous
IL_4WF9_004
IL_71972.1
IL_5NRG_0051/X/186:187,
1/X/215:217		Single stack bend
homologous
IL_4WF9_007
IL_15011.2
IL_5NRG_0061/X/190:197,
1/X/204:212		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_5NRG_0071/X/241:248,
1/X/256:262		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_009
IL_62167.2
IL_5NRG_0081/X/304:306,
1/X/409:413		Major groove minor groove platform with extra cWW
homologous
IL_4WF9_012
IL_34117.1
IL_5NRG_0091/X/336:338,
1/X/386:390		No text annotation
homologous
IL_4WF9_014
IL_76658.1
IL_5NRG_0101/X/527:530,
1/X/541:554		No text annotation
homologous
IL_4WF9_015
IL_44923.1
IL_5NRG_0111/X/581:584,
1/X/597:600		Double sheared
homologous
IL_4WF9_016
IL_58355.2
IL_5NRG_0121/X/607:609,
1/X/618:620		Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_71625.2
IL_5NRG_0131/X/638:640,
1/X/705:707		Isolated non-canonical cWW pair
homologous
IL_4WF9_018
IL_71625.2
IL_5NRG_0141/X/649:653,
1/X/663:667		AAA cross-strand stack
homologous
IL_4WF9_019
IL_66798.3
IL_5NRG_0151/X/717:719,
1/X/851:853		Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_01003.2
IL_5NRG_0161/X/719:723,
1/X/844:851		tHW-tHW cross-strand stack
geometric
IL_4WF9_021
IL_73855.1
IL_5NRG_0171/X/742:743,
1/X/808:810		Single bulged A
homologous
IL_4WF9_022
IL_14190.2
IL_5NRG_0181/X/747:748,
1/X/773:775		Single bulged G
homologous
IL_4WF9_023
IL_28408.2
IL_5NRG_0191/X/748:752,
1/X/769:773		Triple sheared
geometric
IL_4WF9_024
IL_15190.2
IL_5NRG_0201/X/783:785,
1/X/802:803		Major groove platform
homologous
IL_4WF9_026
IL_48076.8
IL_5NRG_0211/X/820:822,
1/X/832:836		Multiple bulged bases
geometric
IL_4WF9_027
IL_89509.1
IL_5NRG_0221/X/882:883,
1/X/984:986		Single stack bend
homologous
IL_4WF9_028
IL_15011.2
IL_5NRG_0231/X/889:893,
1/X/975:978		No text annotation
homologous
IL_4WF9_029
IL_01742.1
IL_5NRG_0241/X/897:898,
1/X/969:971		Single bulged U
homologous
IL_4WF9_030
IL_97561.2
IL_5NRG_0251/X/901:907,
1/X/960:966		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_4WF9_031
IL_94128.1
IL_5NRG_0261/X/907:908,
1/X/958:960		Minor groove platform
geometric
IL_4WF9_032
IL_34520.2
IL_5NRG_0271/X/909:913,
1/X/954:957		C-loop
homologous
IL_4WF9_033
IL_16301.1
IL_5NRG_0281/X/1038:1040,
1/X/1203:1204		Single bulged C
homologous
IL_4WF9_035
IL_05642.2
IL_5NRG_0291/X/1042:1046,
1/X/1197:1201		UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_5NRG_0301/X/1048:1055,
1/X/1194:1195		SSU/LSU pseudoknot
homologous
IL_4WF9_037
IL_11411.1
IL_5NRG_0311/X/1055:1057,
1/X/1193:1194		Single bulged U
geometric
IL_4WF9_038
IL_97561.2
IL_5NRG_0321/X/1062:1068,
1/X/1184:1188		Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_5NRG_0331/X/1068:1074,
1/X/1168:1184		No text annotation
geometric
IL_4WF9_040
IL_50715.4
IL_5NRG_0341/X/1075:1078,
1/X/1165:1167		Isolated non-canonical cWW pair
homologous
IL_4WF9_041
IL_76400.1
IL_5NRG_0351/X/1081:1083,
1/X/1160:1162		Isolated non-canonical cWW pair
homologous
IL_4WF9_042
IL_01003.2
IL_5NRG_0361/X/1235:1237,
1/X/1285:1288		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.5
IL_5NRG_0371/X/1243:1245,
1/X/1277:1279		Isolated cWH basepair
homologous
IL_4WF9_045
IL_10892.2
IL_5NRG_0381/X/1246:1253,
1/X/1272:1276		Kink-turn
homologous
IL_4WF9_046
IL_90775.2
IL_5NRG_0391/X/1257:1259,
1/X/1266:1268		Intercalated cWW
homologous
IL_4WF9_047
IL_53541.1
IL_5NRG_0401/X/1300:1307,
1/X/2038:2044		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_048
IL_62167.2
IL_5NRG_0411/X/1347:1350,
1/X/1647:1648		Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_74641.2
IL_5NRG_0421/X/1356:1360,
1/X/1368:1370		Major groove minor groove platform with tHH
homologous
IL_4WF9_050
IL_06671.1
IL_5NRG_0431/X/1388:1392,
1/X/1413:1417		UAA/GAN
homologous
IL_4WF9_051
IL_89021.3
IL_5NRG_0441/X/1394:1398,
1/X/1407:1411		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_5NRG_0451/X/1461:1465,
1/X/1624:1627		Other IL
homologous
IL_4WF9_054
IL_74317.1
IL_5NRG_1061/X/1476:1480,
1/X/1604:1608		No text annotation
homologous
IL_4WF9_122
IL_67780.1
IL_5NRG_0471/X/1481:1485,
1/X/1598:1603		No text annotation
IL_5NRG_0491/X/1695:1700,
1/X/2031:2033		No text annotation
homologous
IL_4WF9_062
IL_12566.5
IL_5NRG_0501/X/1707:1709,
1/X/2022:2024		Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_5NRG_0511/X/1710:1713,
1/X/2020:2021		Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_74641.2
IL_5NRG_0981/X/1710:1718,
1/X/2017:2021		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_5NRG_0521/X/1713:1718,
1/X/2017:2020		Intercalated tWH
geometric
IL_4WF9_065
IL_28217.1
IL_5NRG_0531/X/1729:1735,
1/X/1740:1747		No text annotation
IL_5NRG_0541/X/1797:1798,
1/X/2007:2009		Single bulged A
homologous
IL_4WF9_068
IL_14190.2
IL_5NRG_0551/X/1825:1831,
1/X/1840:1848		Kink-turn related
homologous
IL_4WF9_069
IL_17069.6
IL_5NRG_0561/X/1864:1867,
1/X/1929:1930		No text annotation
homologous
IL_4WF9_070
NA
IL_5NRG_0571/X/1868:1869,
1/X/1925:1928		Major groove intercalation
homologous
IL_4WF9_071
IL_71421.2
IL_5NRG_1071/X/1873:1876,
1/X/1920:1921		Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_072
IL_73108.2
IL_5NRG_0591/X/1878:1882,
1/X/1914:1918		UAA/GAN with extra stack
geometric
IL_4WF9_073
IL_89021.3
IL_5NRG_1081/X/1883:1887,
1/X/1909:1913		Triple sheared
homologous
IL_4WF9_074
IL_66798.3
IL_5NRG_0611/X/1891:1894,
1/X/1901:1905		UAA/GAN variation
homologous
IL_4WF9_075
IL_77691.7
IL_5NRG_0621/X/1960:1961,
1/X/1991:1994		Bulged stacked bases
geometric
IL_5J7L_318
NA
IL_5NRG_0631/X/1961:1972,
1/X/1988:1991		No text annotation
homologous
IL_4WF9_077
IL_84014.1
IL_5NRG_0641/X/2077:2079,
1/X/2644:2645		Major groove platform
homologous
IL_4WF9_078
IL_48076.8
IL_5NRG_0651/X/2081:2083,
1/X/2639:2642		No text annotation
homologous
IL_4WF9_079
IL_80025.1
IL_5NRG_0661/X/2094:2096,
1/X/2469:2470		Single bulged U
homologous
IL_7RQB_080
NA
IL_5NRG_0671/X/2097:2098,
1/X/2465:2468		Minor groove platform
homologous
IL_7RQB_081
NA
IL_5NRG_0681/X/2108:2110,
1/X/2263:2266		Isolated tHS basepair with bulges
homologous
IL_4WF9_082
IL_87316.1
IL_5NRG_0691/X/2111:2113,
1/X/2260:2262		Isolated non-canonical cWW pair
homologous
IL_4WF9_083
IL_01003.2
IL_5NRG_0701/X/2229:2232,
1/X/2246:2248		Decoding loop related
geometric
IL_3C3Z_002
IL_53541.1
IL_5NRG_1011/X/2229:2235,
1/X/2243:2248		No text annotation
geometric
IL_6O5F_001
NA
IL_5NRG_0711/X/2324:2326,
1/X/2344:2348		Isolated tHS basepair with bulges
homologous
IL_4WF9_086
IL_14250.1
IL_5NRG_0721/X/2377:2380,
1/X/2391:2394		Double sheared
homologous
IL_4WF9_087
IL_58355.2
IL_5NRG_0731/X/2428:2430,
1/X/2441:2442		Single bulged U
homologous
IL_4WF9_088
IL_97561.2
IL_5NRG_0741/X/2480:2481,
1/X/2525:2527		Single stack bend
homologous
IL_4WF9_089
IL_15011.2
IL_5NRG_0751/X/2481:2482,
1/X/2523:2525		Major groove platform
geometric
IL_4WF9_090
IL_48076.8
IL_5NRG_0761/X/2484:2486,
1/X/2520:2521		Major groove platform
homologous
IL_4WF9_091
IL_48076.8
IL_5NRG_0771/X/2486:2488,
1/X/2516:2520		Major groove minor groove platform with extra cWW
geometric
IL_4WF9_092
IL_36931.2
IL_5NRG_0781/X/2493:2497,
1/X/2507:2511		Double sheared with non-canonical cWW
homologous
IL_4WF9_093
IL_87767.2
IL_5NRG_0791/X/2534:2535,
1/X/2607:2609		Major groove platform
homologous
IL_4WF9_094
IL_46637.2
IL_5NRG_0801/X/2537:2539,
1/X/2601:2605		Isolated non-canonical cWW with bulges
homologous
IL_4WF9_095
IL_68118.2
IL_5NRG_0811/X/2539:2540,
1/X/2598:2601		No text annotation
geometric
IL_4WF9_096
IL_44609.2
IL_5NRG_0821/X/2549:2550,
1/X/2567:2570		Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_5NRG_1091/X/2618:2619,
1/X/2628:2630		Single bulged A
homologous
IL_4WF9_098
IL_14190.2
IL_5NRG_0841/X/2663:2667,
1/X/2801:2809		tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.4
IL_5NRG_0851/X/2679:2685,
1/X/2690:2695		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_4WF9_100
IL_16458.5
IL_5NRG_0861/X/2707:2711,
1/X/2752:2754		C-loop
homologous
IL_4WF9_101
IL_63596.12
IL_5NRG_0871/X/2714:2718,
1/X/2745:2749		UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_82016.1
IL_5NRG_0881/X/2722:2723,
1/X/2738:2741		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_5NRG_0891/X/2764:2769,
1/X/2789:2794		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_5NRG_0901/X/2858:2859,
1/X/2898:2900		Major groove intercalation
homologous
IL_5J7L_352
NA
IL_5NRG_0911/X/2863:2865,
1/X/2891:2894		No text annotation
homologous
IL_4WF9_107
IL_05502.1
IL_5NRG_0921/X/2867:2872,
1/X/2885:2889		tHS double platform
homologous
IL_4WF9_108
IL_48489.1
IL_5NRG_0931/Y/2:5,
1/Y/110:113		Tandem non-canonical cWW pairs
homologous
IL_4WF9_109
NA
IL_5NRG_1031/Y/5:14,
1/Y/66:110		No text annotation
IL_5NRG_0941/Y/15:16,
1/Y/63:65		Major groove intercalation
homologous
IL_4WF9_112
IL_14190.2
IL_5NRG_0951/Y/20:27,
1/Y/53:59		No text annotation
homologous
IL_4WF9_113
IL_19048.1
IL_5NRG_0961/Y/28:29,
1/Y/49:52		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA

Problematic loops

#loop idProblemSequence
IL_5NRG_097Isolated cWS basepair
IL_5NRG_046No text annotation
IL_5NRG_048No text annotation
IL_5NRG_099Isolated non-canonical cWW with bulges
IL_5NRG_058No text annotation
IL_5NRG_100No text annotation
IL_5NRG_060Triple sheared with non-canonical cWW
IL_5NRG_102No text annotation
IL_5NRG_083No text annotation
IL_5NRG_104No text annotation
IL_5NRG_105No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5NRG_0011/X/30:31,
1/X/520:527,
1/X/554:555		No text annotation
homologous
J3_7RQB_001
NA
J3_5NRG_0151/X/30:31,
1/X/520:530,
1/X/541:555		No text annotation
homologous
J3_4WF9_011
J3_17917.1
J3_5NRG_0161/X/32:35,
1/X/491:507,
1/X/514:519		No text annotation
homologous
J3_4WF9_012
J3_07616.1
J3_5NRG_0021/X/56:57,
1/X/70:76,
1/X/109:113		No text annotation
homologous
J3_5J7L_037
NA
J3_5NRG_0041/X/728:734,
1/X/818:820,
1/X/836:839		No text annotation
homologous
J3_4WF9_002
J3_46658.1
J3_5NRG_0051/X/743:745,
1/X/777:781,
1/X/805:808		No text annotation
homologous
J3_4WF9_003
J3_69816.1
J3_5NRG_0061/X/1335:1340,
1/X/1669:1671,
1/X/1683:1686		No text annotation
homologous
J3_4WF9_004
J3_32852.7
J3_5NRG_0171/X/1343:1346,
1/X/1649:1655,
1/X/1664:1666		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_5NRG_0081/X/1381:1387,
1/X/1418:1422,
1/X/1439:1440		No text annotation
homologous
J3_7RQB_009
NA
J3_5NRG_0181/X/1468:1473,
1/X/1611:1612,
1/X/1615:1621		No text annotation
homologous
J3_9DFE_013
J3_34864.3
J3_5NRG_0101/X/2118:2120,
1/X/2223:2228,
1/X/2249:2255		No text annotation
homologous
J3_4WF9_007
J3_07703.1
J3_5NRG_0191/X/2309:2312,
1/X/2410:2422,
1/X/2448:2454		No text annotation
homologous
J3_4WF9_019
J3_39320.1
J3_5NRG_0111/X/2322:2324,
1/X/2348:2350,
1/X/2359:2364		No text annotation
homologous
J3_4WF9_008
J3_05327.1
J3_5NRG_0121/X/2544:2547,
1/X/2572:2574,
1/X/2588:2594		No text annotation
homologous
J3_4WF9_009
J3_32601.6
J3_5NRG_0131/X/2816:2817,
1/X/2826:2831,
1/X/2909:2913		No text annotation
homologous
J3_7RQB_013
NA
J3_5NRG_0141/X/2834:2835,
1/X/2851:2856,
1/X/2902:2906		No text annotation
homologous
J3_7RQB_014
NA
J4_5NRG_0011/X/271:272,
1/X/416:421,
1/X/445:452,
1/X/467:470		No text annotation
homologous
J4_4WF9_001
J4_94698.1
J4_5NRG_0021/X/340:344,
1/X/359:362,
1/X/366:368,
1/X/380:384		No text annotation
homologous
J4_4WF9_002
J4_16174.1
J4_5NRG_0031/X/644:647,
1/X/669:673,
1/X/680:684,
1/X/694:701		No text annotation
homologous
J4_4WF9_003
J4_69347.1
J4_5NRG_0041/X/1308:1313,
1/X/1331:1332,
1/X/1689:1692,
1/X/2036:2037		No text annotation
homologous
J4_4WF9_004
J4_64571.6
J4_5NRG_0051/X/1347:1351,
1/X/1375:1380,
1/X/1441:1442,
1/X/1641:1648		No text annotation
homologous
J4_4WF9_005
J4_77353.1
J4_5NRG_0061/X/1350:1351,
1/X/1375:1380,
1/X/1441:1442,
1/X/1641:1647		No text annotation
homologous
J4_4WF9_006
J4_48150.1
J4_5NRG_0071/X/1799:1803,
1/X/1815:1819,
1/X/1854:1857,
1/X/2002:2006		No text annotation
homologous
J4_4WF9_007
J4_61477.6
J4_5NRG_0081/X/2312:2316,
1/X/2370:2374,
1/X/2397:2399,
1/X/2408:2410		No text annotation
homologous
J4_4WF9_008
J4_98139.1
J4_5NRG_0091/X/2670:2673,
1/X/2701:2703,
1/X/2758:2762,
1/X/2796:2798		No text annotation
homologous
J4_4WF9_009
J4_77044.5
J5_5NRG_0011/X/47:54,
1/X/115:120,
1/X/129:130,
1/X/149:157,
1/X/171:180		No text annotation
J5_5NRG_0021/X/576:578,
1/X/603:607,
1/X/620:622,
1/X/1299:1300,
1/X/2044:2045		No text annotation
homologous
J5_4WF9_003
J5_43153.6
J5_5NRG_0031/X/627:632,
1/X/713:716,
1/X/854:857,
1/X/1234:1235,
1/X/1288:1294		No text annotation
homologous
J5_4WF9_004
J5_74302.6
J5_5NRG_0041/X/1718:1726,
1/X/1750:1751,
1/X/1778:1779,
1/X/1783:1791,
1/X/2015:2017		No text annotation
homologous
J5_4WF9_005
J5_99177.1
J5_5NRG_0051/X/2084:2091,
1/X/2473:2480,
1/X/2527:2534,
1/X/2609:2615,
1/X/2633:2638		No text annotation
J5_5NRG_0061/X/2101:2104,
1/X/2270:2273,
1/X/2285:2286,
1/X/2308:2309,
1/X/2454:2462		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J6_5NRG_0011/X/45:46,
1/X/181:186,
1/X/217:227,
1/X/234:238,
1/X/265:269,
1/X/472:479		No text annotation
J6_5NRG_0021/X/2101:2104,
1/X/2270:2273,
1/X/2285:2286,
1/X/2308:2312,
1/X/2410:2422,
1/X/2448:2462		No text annotation
J7_5NRG_0011/X/8:15,
1/X/570:576,
1/X/2045:2050,
1/X/2067:2070,
1/X/2652:2657,
1/X/2815:2816,
1/X/2913:2914		No text annotation
J7_5NRG_0021/X/862:867,
1/X/880:881,
1/X/987:990,
1/X/1015:1020,
1/X/1031:1035,
1/X/1207:1208,
1/X/1224:1229		No text annotation

Problematic loops

#loop idProblemSequence
J3_5NRG_003No text annotation
J3_5NRG_007No text annotation
J3_5NRG_009No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.07 s