HL_5NRG_012

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

5NRG|1|X|A|372, 5NRG|1|X|A|373, 5NRG|1|X|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_012 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1104

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

5NRG|1|X|G|370
5NRG|1|X|U|371
5NRG|1|X|A|372
5NRG|1|X|A|373
5NRG|1|X|U|374
5NRG|1|X|A|375
5NRG|1|X|A|376
5NRG|1|X|U|377
5NRG|1|X|C|378

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24