HL_5NRG_025

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

5NRG|1|X|U|872, 5NRG|1|X|G|875

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_025 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.0808

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

5NRG|1|X|U|871
5NRG|1|X|U|872
5NRG|1|X|U|873
5NRG|1|X|A|874
5NRG|1|X|G|875
5NRG|1|X|G|876

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L15