HL_5NRG_026

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

ACGAGGGGGUUACCGAAU

Length

18 nucleotides

Bulged bases

5NRG|1|X|G|937

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_026 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.3502

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NRG|1|X|A|920
5NRG|1|X|C|921
5NRG|1|X|G|922
5NRG|1|X|A|923
5NRG|1|X|G|924
5NRG|1|X|G|925
5NRG|1|X|G|926
5NRG|1|X|G|937
5NRG|1|X|G|938
5NRG|1|X|U|939
5NRG|1|X|U|940
5NRG|1|X|A|941
5NRG|1|X|C|942
5NRG|1|X|C|943
5NRG|1|X|G|944
5NRG|1|X|A|945
5NRG|1|X|A|946
5NRG|1|X|U|947

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain S

50S ribosomal protein L25