HL_5NRG_029

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GCCCAGACAACUAGCUCAUAGUCGAGU

Length

27 nucleotides

Bulged bases

5NRG|1|X|A|1090, 5NRG|1|X|A|1098, 5NRG|1|X|G|1099, 5NRG|1|X|C|1144, 5NRG|1|X|U|1145, 5NRG|1|X|C|1146, 5NRG|1|X|A|1147, 5NRG|1|X|U|1149

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_029 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3388

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

5NRG|1|X|G|1086
5NRG|1|X|C|1087
5NRG|1|X|C|1088
5NRG|1|X|C|1089
5NRG|1|X|A|1090
5NRG|1|X|G|1091
5NRG|1|X|A|1092
5NRG|1|X|C|1093
5NRG|1|X|A|1094
5NRG|1|X|A|1095
5NRG|1|X|C|1096
5NRG|1|X|U|1097
5NRG|1|X|A|1098
5NRG|1|X|G|1099
5NRG|1|X|C|1144
5NRG|1|X|U|1145
5NRG|1|X|C|1146
5NRG|1|X|A|1147
5NRG|1|X|U|1149
5NRG|1|X|A|1150
5NRG|1|X|G|1151
5NRG|1|X|U|1152
5NRG|1|X|C|1153
5NRG|1|X|G|1154
5NRG|1|X|A|1155
5NRG|1|X|G|1156
5NRG|1|X|U|1157

Current chains

Chain X

23S ribosomal RNA

Nearby chains