HL_5NRG_036

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUAAGCAGUAAGGCUGAGUAUCCGGUACUCGAGGCUGAGCUGUGAUG

Length

47 nucleotides

Bulged bases

5NRG|1|X|C|1541, 5NRG|1|X|U|1568

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NRG|1|X|C|1511
5NRG|1|X|U|1512
5NRG|1|X|A|1513
5NRG|1|X|A|1514
5NRG|1|X|G|1515
5NRG|1|X|C|1516
5NRG|1|X|A|1517
5NRG|1|X|G|1518
5NRG|1|X|U|1519
5NRG|1|X|A|1520
5NRG|1|X|A|1521
5NRG|1|X|G|1522
5NRG|1|X|G|1523
5NRG|1|X|C|1524
5NRG|1|X|U|1525
5NRG|1|X|G|1526
5NRG|1|X|A|1527
5NRG|1|X|G|1528
5NRG|1|X|U|1529
5NRG|1|X|A|1539
5NRG|1|X|U|1540
5NRG|1|X|C|1541
5NRG|1|X|C|1542
5NRG|1|X|G|1543
5NRG|1|X|G|1544
5NRG|1|X|U|1545
5NRG|1|X|A|1546
5NRG|1|X|C|1547
5NRG|1|X|U|1548
5NRG|1|X|C|1549
5NRG|1|X|G|1550
5NRG|1|X|A|1554
5NRG|1|X|G|1555
5NRG|1|X|G|1556
5NRG|1|X|C|1557
5NRG|1|X|U|1558
5NRG|1|X|G|1559
5NRG|1|X|A|1560
5NRG|1|X|G|1561
5NRG|1|X|C|1562
5NRG|1|X|U|1563
5NRG|1|X|G|1564
5NRG|1|X|U|1565
5NRG|1|X|G|1566
5NRG|1|X|A|1567
5NRG|1|X|U|1568
5NRG|1|X|G|1569

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2