HL_5NRG_051

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5NRG|1|X|A|2295, 5NRG|1|X|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_051 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0793

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

5NRG|1|X|C|2291
5NRG|1|X|U|2292
5NRG|1|X|A|2293
5NRG|1|X|A|2294
5NRG|1|X|A|2295
5NRG|1|X|A|2296
5NRG|1|X|G|2297
5NRG|1|X|G|2298
5NRG|1|X|U|2299
5NRG|1|X|A|2300
5NRG|1|X|A|2301
5NRG|1|X|C|2302
5NRG|1|X|G|2303

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27