HL_5NRG_056

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

5NRG|1|X|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_056 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.1249

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5NRG|1|X|C|2431
5NRG|1|X|G|2432
5NRG|1|X|C|2433
5NRG|1|X|A|2434
5NRG|1|X|U|2435
5NRG|1|X|G|2436
5NRG|1|X|G|2437
5NRG|1|X|A|2438
5NRG|1|X|A|2439
5NRG|1|X|G|2440

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L15