HL_5NRG_063

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5NRG|1|X|G|2778, 5NRG|1|X|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_063 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1075

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|C|2772
5NRG|1|X|U|2773
5NRG|1|X|G|2774
5NRG|1|X|A|2775
5NRG|1|X|A|2776
5NRG|1|X|A|2777
5NRG|1|X|G|2778
5NRG|1|X|C|2779
5NRG|1|X|A|2780
5NRG|1|X|U|2781
5NRG|1|X|C|2782
5NRG|1|X|U|2783
5NRG|1|X|A|2784
5NRG|1|X|A|2785
5NRG|1|X|G|2786

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13