HL_5NRG_066

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

AUGGUGACAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_066 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2978

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5NRG|1|X|A|2874
5NRG|1|X|U|2875
5NRG|1|X|G|2876
5NRG|1|X|G|2877
5NRG|1|X|U|2878
5NRG|1|X|G|2879
5NRG|1|X|A|2880
5NRG|1|X|C|2881
5NRG|1|X|A|2882
5NRG|1|X|U|2883

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L19