HL_5NS3_002

3D structure

PDB id

5NS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of Cy5 cyanine fluorophores stacked onto the end of double-stranded RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAUCCG*G

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NS3_002 not in the Motif Atlas

Geometric match to HL_1MJI_002

Geometric discrepancy: 0.0605

The information below is about HL_1MJI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5NS3|1|D|C|38
5NS3|1|D|A|39
5NS3|1|D|U|40
5NS3|1|D|C|42
5NS3|1|D|C|43
5NS3|1|D|G|44
*
5NS3|1|D|G|44

Current chains

Chain D

double-stranded RNA

Nearby chains

Chain A

50S ribosomal protein L5

Chain C

double-stranded RNA