HL_5NWQ_002

3D structure

PDB id

5NWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the thermobifida fusca guanidine III riboswitch with guanidine.

Experimental method

X-RAY DIFFRACTION

Resolution

1.91 Å

Loop

Sequence

CCCGGUCAGG

Length

10 nucleotides

Bulged bases

5NWQ|1|B|C|26, 5NWQ|1|B|G|28

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWQ_002 not in the Motif Atlas

Homologous match to HL_5NWQ_001

Geometric discrepancy: 0.1262

The information below is about HL_5NWQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60358.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NWQ|1|B|C|20
5NWQ|1|B|C|21
5NWQ|1|B|C|22
5NWQ|1|B|G|23
5NWQ|1|B|G|24
5NWQ|1|B|U|25
5NWQ|1|B|C|26
5NWQ|1|B|A|27
5NWQ|1|B|G|28
5NWQ|1|B|G|29

Current chains

Chain B

Guanidine III riboswitch

Nearby chains