HL_5NWY_003

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_003 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.0855

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5NWY|1|0|G|158
5NWY|1|0|G|159
5NWY|1|0|A|160
5NWY|1|0|A|161
5NWY|1|0|A|162
5NWY|1|0|C|163

Current chains

Chain 0

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S20

Chain c

50S ribosomal protein L19