HL_5NWY_008

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.08

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NWY|1|0|A|320
5NWY|1|0|A|321
5NWY|1|0|C|322
5NWY|1|0|U|323
5NWY|1|0|G|324
5NWY|1|0|A|325
5NWY|1|0|G|326
5NWY|1|0|A|327
5NWY|1|0|C|328
5NWY|1|0|A|329
5NWY|1|0|C|330
5NWY|1|0|G|331
5NWY|1|0|G|332
5NWY|1|0|U|333

Current chains

Chain 0

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S16

Chain J

30S ribosomal protein S20