HL_5NWY_013

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_013 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1897

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.2

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

5NWY|1|0|C|522
5NWY|1|0|A|523
5NWY|1|0|G|524
5NWY|1|0|C|525
5NWY|1|0|C|526
5NWY|1|0|G|527

Current chains

Chain 0

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S12