HL_5NWY_018

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

5NWY|1|0|C|841, 5NWY|1|0|U|842, 5NWY|1|0|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3145

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5NWY|1|0|C|840
5NWY|1|0|C|841
5NWY|1|0|U|842
5NWY|1|0|U|843
5NWY|1|0|G|844
5NWY|1|0|A|845
5NWY|1|0|G|846

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 1

30S ribosomal protein S2

Chain H

30S ribosomal protein S18