HL_5NWY_034
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUCUGAUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NWY_034 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.149
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5NWY|1|M|A|30
5NWY|1|M|U|31
5NWY|1|M|U|32
5NWY|1|M|C|33
5NWY|1|M|U|34
5NWY|1|M|G|35
5NWY|1|M|A|36
5NWY|1|M|U|37
5NWY|1|M|U|38
Current chains
- Chain M
- Gln-tRNA
Nearby chains
- Chain 0
- Small subunit ribosomal RNA; SSU rRNA
- Chain 8
- 30S ribosomal protein S9
- Chain t
- mRNA
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