HL_5NWY_044

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5NWY|1|N|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_044 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1068

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5NWY|1|N|C|305
5NWY|1|N|U|306
5NWY|1|N|G|307
5NWY|1|N|G|308
5NWY|1|N|A|309
5NWY|1|N|A|310
5NWY|1|N|A|311
5NWY|1|N|G|312

Current chains

Chain N

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L24