HL_5NWY_051

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

5NWY|1|N|U|546, 5NWY|1|N|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_051 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.2313

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5NWY|1|N|G|543
5NWY|1|N|C|544
5NWY|1|N|U|545
5NWY|1|N|U|546
5NWY|1|N|A|547
5NWY|1|N|G|548
5NWY|1|N|G|549
5NWY|1|N|C|550

Current chains

Chain N

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L13

Chain e

50S ribosomal protein L21