HL_5NWY_057
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGUUGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 5NWY|1|N|U|747, 5NWY|1|N|A|751, 5NWY|1|N|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NWY_057 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.1098
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5NWY|1|N|U|744
5NWY|1|N|G|745
5NWY|1|N|U|746
5NWY|1|N|U|747
5NWY|1|N|G|748
5NWY|1|N|A|749
5NWY|1|N|A|750
5NWY|1|N|A|751
5NWY|1|N|A|752
5NWY|1|N|A|753
Current chains
- Chain N
- 23S rRNA
Nearby chains
- Chain Q
- 50S ribosomal protein L3
- Chain f
- 50S ribosomal protein L22
- Chain n
- 50S ribosomal protein L32
- Chain p
- 50S ribosomal protein L34
- Chain s
- VemP nascent chain
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