HL_5NWY_061

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

5NWY|1|N|U|958, 5NWY|1|N|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_061 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0891

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5NWY|1|N|U|955
5NWY|1|N|G|956
5NWY|1|N|C|957
5NWY|1|N|U|958
5NWY|1|N|A|959
5NWY|1|N|A|960
5NWY|1|N|C|961
5NWY|1|N|G|962

Current chains

Chain N

23S rRNA

Nearby chains

Chain O

5S ribosomal RNA; 5S rRNA

Chain Z

50S ribosomal protein L16