HL_5NWY_064

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

5NWY|1|N|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_064 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.4621

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5NWY|1|N|C|1092
5NWY|1|N|G|1093
5NWY|1|N|U|1094
5NWY|1|N|A|1095
5NWY|1|N|A|1096
5NWY|1|N|U|1097
5NWY|1|N|A|1098
5NWY|1|N|G|1099

Current chains

Chain N

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L6

Chain V

50S ribosomal protein L11

Chain r

50S ribosomal protein L36