HL_5NWY_071

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5NWY|1|N|A|1453, 5NWY|1|N|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_071 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.2018

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NWY|1|N|C|1451
5NWY|1|N|G|1452
5NWY|1|N|A|1453
5NWY|1|N|C|1454
5NWY|1|N|G|1455
5NWY|1|N|G|1456
5NWY|1|N|U|1457
5NWY|1|N|U|1458
5NWY|1|N|G|1459

Current chains

Chain N

23S rRNA

Nearby chains

Chain a

50S ribosomal protein L17