HL_5NWY_083
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 5NWY|1|N|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NWY_083 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1535
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NWY|1|N|G|1910
5NWY|1|N|U|1911
5NWY|1|N|A|1912
5NWY|1|N|A|1913
5NWY|1|N|C|1914
5NWY|1|N|U|1915
5NWY|1|N|A|1916
5NWY|1|N|U|1917
5NWY|1|N|A|1918
5NWY|1|N|A|1919
5NWY|1|N|C|1920
Current chains
- Chain N
- 23S rRNA
Nearby chains
- Chain 0
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- Transfer RNA; tRNA
Coloring options: