HL_5NWY_086

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

5NWY|1|N|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_086 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.4738

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

5NWY|1|N|C|2143
5NWY|1|N|G|2144
5NWY|1|N|C|2145
5NWY|1|N|C|2146
5NWY|1|N|A|2147
5NWY|1|N|G|2148

Current chains

Chain N

23S rRNA

Nearby chains