HL_5NZ6_001

3D structure

PDB id

5NZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

CCCGGUCACG

Length

10 nucleotides

Bulged bases

5NZ6|1|A|C|26, 5NZ6|1|A|C|28

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NZ6_001 not in the Motif Atlas

Geometric match to HL_5NWQ_001

Geometric discrepancy: 0.1186

The information below is about HL_5NWQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60358.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NZ6|1|A|C|20
5NZ6|1|A|C|21
5NZ6|1|A|C|22
5NZ6|1|A|G|23
5NZ6|1|A|G|24
5NZ6|1|A|U|25
5NZ6|1|A|C|26
5NZ6|1|A|A|27
5NZ6|1|A|C|28
5NZ6|1|A|G|29

Current chains

Chain A

RNA (41-MER)

Nearby chains