HL_5O2R_022

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5O2R|1|A|A|781, 5O2R|1|A|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O2R_022 not in the Motif Atlas

Geometric match to HL_6JQ6_004

Geometric discrepancy: 0.3688

The information below is about HL_6JQ6_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5O2R|1|A|U|779
5O2R|1|A|G|780
5O2R|1|A|A|781
5O2R|1|A|A|782
5O2R|1|A|A|783
5O2R|1|A|G|784
5O2R|1|A|G|785

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2