HL_5O2R_035

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5O2R|1|A|A|1453, 5O2R|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O2R_035 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.2076

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5O2R|1|A|C|1451
5O2R|1|A|G|1452
5O2R|1|A|A|1453
5O2R|1|A|C|1454
5O2R|1|A|G|1455
5O2R|1|A|G|1456
5O2R|1|A|U|1457
5O2R|1|A|U|1458
5O2R|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17