HL_5O2R_065

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5O2R|1|A|G|2751, 5O2R|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O2R_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0995

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5O2R|1|A|C|2745
5O2R|1|A|U|2746
5O2R|1|A|G|2747
5O2R|1|A|A|2748
5O2R|1|A|A|2749
5O2R|1|A|A|2750
5O2R|1|A|G|2751
5O2R|1|A|C|2752
5O2R|1|A|A|2753
5O2R|1|A|U|2754
5O2R|1|A|C|2755
5O2R|1|A|U|2756
5O2R|1|A|A|2757
5O2R|1|A|A|2758
5O2R|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13