HL_5O2R_103

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGGUGGUUAG

Length

11 nucleotides

Bulged bases

5O2R|1|x|G|18, 5O2R|1|x|U|19, 5O2R|1|x|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O2R_103 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1599

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O2R|1|x|C|13
5O2R|1|x|A|14
5O2R|1|x|G|15
5O2R|1|x|G|16
5O2R|1|x|U|17
5O2R|1|x|G|17|||A
5O2R|1|x|G|18
5O2R|1|x|U|19
5O2R|1|x|U|20
5O2R|1|x|A|21
5O2R|1|x|G|22

Current chains

Chain x

P-site Ile-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5