HL_5O2R_104
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCUGAUAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5O2R_104 not in the Motif Atlas
- Homologous match to HL_4V9Q_214
- Geometric discrepancy: 0.1397
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
5O2R|1|x|C|31
5O2R|1|x|C|32
5O2R|1|x|U|33
5O2R|1|x|G|34
5O2R|1|x|A|35
5O2R|1|x|U|36
5O2R|1|x|A|37
5O2R|1|x|A|38
5O2R|1|x|G|39
Current chains
- Chain x
- P-site Ile-tRNA
Nearby chains
- Chain 7
- mRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9
- Chain v
- Peptide chain release factor RF1
Coloring options: