HL_5O5J_014

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GCUUAAC

Length

7 nucleotides

Bulged bases

5O5J|1|A|U|599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O5J_014 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.0808

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5O5J|1|A|G|597
5O5J|1|A|C|598
5O5J|1|A|U|599
5O5J|1|A|U|600
5O5J|1|A|A|601
5O5J|1|A|A|602
5O5J|1|A|C|603

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16