HL_5O5J_025

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5O5J|1|A|G|1074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O5J_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1379

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

5O5J|1|A|G|1069
5O5J|1|A|U|1070
5O5J|1|A|U|1071
5O5J|1|A|A|1072
5O5J|1|A|A|1073
5O5J|1|A|G|1074
5O5J|1|A|U|1075
5O5J|1|A|C|1076

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain V

30S ribosomal protein S2